Autoimmune Protocol Meal Planning
24 Nov
An Ounce of Prevention is Worth a Pound of Cure

Autoimmune Protocol Meal Planning: Complete 30-Day Guide to AIP Success

If you’re searching for comprehensive autoimmune protocol meal planning guidance, you’re likely dealing with an autoimmune condition and feeling overwhelmed by the restrictive nature of the Autoimmune Protocol (AIP) diet. As a physician who transitioned from oncology to functional medicine, I’ve guided hundreds of autoimmune patients through successful AIP implementation, and I understand both the scientific rationale and the practical challenges you face.

The Autoimmune Protocol represents one of the most evidence-based dietary approaches for managing autoimmune diseases, with research demonstrating significant symptom reduction in conditions like inflammatory bowel disease, Hashimoto’s thyroiditis, and rheumatoid arthritis. However, the elimination phase removes numerous food categories, leaving many patients confused about what they can eat rather than empowered by healing possibilities.

Living and practicing in South Florida, I’ve developed autoimmune protocol meal planning strategies that account for our subtropical climate, seasonal produce availability, and the social challenges of maintaining AIP while dining out in our restaurant-rich culture. This comprehensive 30-day guide provides everything you need—from shopping lists and meal plans to recipes and reintroduction protocols—to successfully implement AIP and reclaim your health from autoimmune dysfunction.

Understanding the Autoimmune Protocol: Science-Based Healing

Why AIP Works: The Immune-Gut Connection

Autoimmune diseases affect over 50 million Americans, with conventional medicine offering primarily immunosuppressive medications that manage symptoms without addressing root causes. The Autoimmune Protocol takes a fundamentally different approach, targeting the three factors required for autoimmune disease development:

The Autoimmune Triangle:

  1. Genetic Predisposition (cannot change)
  2. Intestinal Permeability (leaky gut—can heal)
  3. Environmental Triggers (can eliminate)

Research published in the Journal of Clinical Gastroenterology demonstrates that 73% of Hashimoto’s patients following AIP for 10 weeks experienced reduction in thyroid antibodies and symptom improvement. Similarly, studies of inflammatory bowel disease patients show significant quality of life improvements within 6 weeks of AIP implementation.

How AIP Heals:

✅ Removes inflammatory food triggers that perpetuate intestinal permeability
✅ Eliminates immune system activators (grains, legumes, dairy, eggs, nightshades)
✅ Provides nutrient-dense healing foods rich in vitamins, minerals, antioxidants
✅ Supports gut barrier repair through bone broth, fermented foods, omega-3s
✅ Reduces systemic inflammation by removing food sensitivities
✅ Rebalances immune system function through dietary immunomodulation

AIP Food Lists: What to Eliminate and What to Emphasize

ELIMINATE During AIP (Minimum 30 Days, Typically 60-90 Days):

Grains & Pseudo-Grains:

  • All wheat, rice, corn, oats, quinoa, amaranth, buckwheat
  • Grain-based products (bread, pasta, crackers, cereals)
  • Rationale: Contains proteins (gluten, prolamins) that increase intestinal permeability

Legumes:

  • Beans, lentils, peanuts, soy, peas, chickpeas
  • All legume-derived products (tofu, tempeh, soy sauce, peanut butter)
  • Rationale: Contains lectins and phytates that irritate gut lining and impair nutrient absorption

Dairy Products:

  • All milk, cheese, yogurt, butter (ghee allowed after 30 days if tolerated)
  • Whey and casein protein powders
  • Rationale: Casein protein structurally similar to gluten; lactose difficult to digest

Eggs:

  • Whole eggs and egg-containing products
  • Both whites (particularly problematic) and yolks
  • Rationale: Egg whites contain lysozyme, which increases intestinal permeability

Nightshade Vegetables:

  • Tomatoes, potatoes, eggplant, peppers (all colors)
  • Goji berries, tomatillos, paprika, cayenne
  • Rationale: Contains alkaloids (solanine, capsaicin) that can increase inflammation

Nuts & Seeds:

  • All nuts (almonds, walnuts, cashews, etc.)
  • All seeds (sunflower, pumpkin, chia, flax, sesame)
  • Seed-based spices (coriander, cumin, mustard, nutmeg)
  • Coffee (coffee beans are seeds)
  • Rationale: Contains compounds that inhibit gut healing; common allergens

Processed Foods & Additives:

  • Refined sugars, artificial sweeteners
  • Processed seed oils (canola, vegetable, soybean)
  • Food additives, preservatives, emulsifiers, thickeners (gums, carrageenan)
  • Alcohol (all types)
  • Rationale: Disrupts gut microbiome, increases inflammation, impairs healing

NSAIDs & Other Medications (with doctor approval):

  • Ibuprofen, naproxen, aspirin
  • Rationale: Increases intestinal permeability, damages gut lining

EMPHASIZE During AIP (Unlimited Amounts):

Quality Proteins (5-8 oz per meal):

  • Grass-fed meats: Beef, lamb, bison, venison
  • Pasture-raised poultry: Chicken, turkey, duck
  • Wild-caught fish: Salmon, sardines, mackerel, cod, halibut
  • Organ meats (nutrient powerhouses): Liver, heart, kidney (3-4 oz, 2-3x weekly)
  • Bone broth: Homemade from quality bones (2+ cups daily)

Vegetables (Fill half your plate):

  • Leafy greens: Kale, spinach, arugula, chard, collards, lettuce
  • Cruciferous: Broccoli, cauliflower, Brussels sprouts, cabbage, bok choy
  • Root vegetables: Sweet potatoes, carrots, beets, turnips, rutabaga, parsnips
  • Squashes: Butternut, acorn, spaghetti, zucchini, yellow squash
  • Other: Asparagus, artichokes, onions, garlic, celery, cucumber, mushrooms

Healthy Fats (2-3 tbsp per meal):

  • Extra virgin olive oil (cold applications)
  • Avocado oil (high-heat cooking)
  • Coconut oil (medium-chain triglycerides)
  • Animal fats: Tallow, lard, duck fat (from quality sources)
  • Avocado (whole food fat source)

Fermented Foods (1/4 cup daily):

  • Sauerkraut, kimchi (no nightshade versions)
  • Fermented vegetables (carrots, beets, radishes)
  • Coconut yogurt (unsweetened, no additives)
  • Kombucha (low-sugar, 4-8 oz)
  • Water kefir

Fruits (1-2 servings daily):

  • Berries: Blueberries, strawberries, blackberries, raspberries (lower sugar)
  • Other fruits: Apples, pears, peaches, plums, cherries (moderate amounts)
  • Tropical: Bananas, mangoes, pineapple (higher sugar—limit to 1-2x weekly)

Herbs & Spices (unlimited for flavor):

  • Fresh: Basil, cilantro, parsley, mint, rosemary, thyme, oregano
  • Dried: Turmeric, ginger, cinnamon, garlic powder, onion powder, sea salt

AIP-Compliant Sweeteners (minimal use):

  • Raw honey, maple syrup, coconut sugar (1-2 tsp daily max)
  • Rationale: Even natural sugars can promote inflammation—use sparingly

The Two Phases of AIP Success

Phase 1: Elimination (30-90 Days)

Objective: Remove all potential immune triggers and inflammatory foods while flooding your body with nutrient-dense healing foods.

Timeline:

  • Minimum duration: 30 days (allows measurable symptom improvement)
  • Optimal duration: 60-90 days (allows significant gut healing and antibody reduction)
  • Individual variation: Some people require 6+ months elimination for full symptom resolution

What to Expect:

Days 1-7: Adjustment Period

  • Possible withdrawal symptoms (fatigue, headaches, irritability)
  • Increased food cravings
  • Learning curve with meal preparation
  • Social challenges at meals

Days 8-21: Adaptation Phase

  • Withdrawal symptoms resolve
  • Energy begins improving
  • Digestive changes (often temporary constipation or diarrhea)
  • Reduced cravings

Days 22-30: Initial Improvements

  • Noticeable symptom reduction (60-70% report improvement)
  • Better energy and sleep
  • Improved mental clarity
  • Reduced joint pain
  • Less bloating and digestive discomfort

Days 31-90: Continued Healing

  • Continued symptom improvements
  • Gut barrier healing
  • Possible reduction in antibody levels
  • New baseline health established

Phase 2: Reintroduction (Minimum 3 Months Post-Elimination)

Objective: Systematically test eliminated foods to identify personal triggers while expanding diet variety.

This phase is crucial but often rushed. Proper reintroduction provides valuable information about your unique immune triggers and allows the most diverse, sustainable diet possible long-term.

30-Day AIP Meal Plan: Complete Implementation Guide

Week 1: Building Your Foundation

Monday

Breakfast: Sweet Potato Hash with Ground Turkey

  • 1 medium sweet potato, diced
  • 8 oz ground turkey
  • 1 cup spinach
  • 1/2 onion, diced
  • 2 tbsp avocado oil
  • Sea salt, turmeric, garlic powder

Lunch: Leftover Turkey Hash + Mixed Green Salad

  • Remaining turkey hash from breakfast
  • Mixed greens with cucumber, shredded carrots
  • Olive oil and lemon dressing
  • 1/4 avocado

Dinner: Roasted Salmon with Roasted Vegetables

  • 6 oz wild-caught salmon
  • Broccoli, carrots, and Brussels sprouts drizzled with olive oil
  • Side of sauerkraut (2 tbsp)
  • Baked sweet potato with coconut oil

Snack: Apple slices with coconut butter (if needed)

Tuesday

Breakfast: Breakfast Sausage with Roasted Butternut Squash

  • 2 AIP-compliant sausage links (homemade or Whole Foods)
  • 1 cup roasted butternut squash cubes
  • Sautéed kale with garlic
  • 1/2 banana

Lunch: Chicken Salad Lettuce Wraps

  • Shredded chicken mixed with avocado mayo (recipe below)
  • Romaine lettuce leaves as wraps
  • Shredded carrots, cucumber slices
  • Side of fermented carrots

Dinner: Grass-Fed Beef Stir-Fry

  • 6 oz grass-fed beef strips
  • Bok choy, mushrooms, onions, zucchini
  • Coconut aminos for flavor
  • Cauliflower rice
  • Bone broth as cooking liquid

Snack: Berries with coconut cream

Wednesday

Breakfast: Veggie Beef Breakfast Skillet

  • 6 oz ground beef
  • Diced sweet potato, zucchini, onions
  • Spinach stirred in at end
  • Fresh herbs (parsley, basil)

Lunch: Leftover Beef Stir-Fry over mixed greens

Dinner: Lemon Herb Chicken with Roasted Root Vegetables

  • 6 oz chicken breast with fresh lemon, rosemary, thyme
  • Roasted carrots, parsnips, beets, turnips
  • Side of sauerkraut
  • Arugula salad with olive oil dressing

Snack: Sliced cucumber with avocado

Thursday

Breakfast: Pork Breakfast Patties with Roasted Acorn Squash

  • 2 pork patties (ground pork + herbs + sea salt)
  • 1 cup roasted acorn squash
  • Sautéed chard with garlic
  • Blueberries on side

Lunch: Salmon Salad Collard Wraps

  • Canned wild salmon mixed with avocado mayo
  • Large collard green leaves as wraps
  • Shredded cabbage, cucumber
  • Lemon juice

Dinner: Turkey Meatballs with Zucchini Noodles

  • Turkey meatballs (ground turkey, onion, garlic, herbs)
  • Spiralized zucchini noodles
  • AIP-compliant marinara (no nightshades—use beet-based)
  • Side salad with olive oil dressing

Snack: Plantain chips with guacamole (nightshade-free)

Friday

Breakfast: Lamb Breakfast Bowl

  • 6 oz ground lamb, seasoned with mint, garlic
  • Roasted butternut squash
  • Steamed broccoli
  • Drizzle of olive oil

Lunch: Leftover Turkey Meatballs with side salad

Dinner: Grilled Shrimp with Asparagus

  • 8 oz wild-caught shrimp
  • Grilled asparagus with lemon
  • Roasted cauliflower with turmeric
  • Mixed greens salad
  • Sweet potato wedges

Snack: Bone broth (1-2 cups)

Saturday

Breakfast: AIP Pancakes

  • Made with cassava flour, banana, coconut milk
  • Topped with berries and coconut cream
  • Side of breakfast sausage

Lunch: Chicken Bone Broth Soup

  • Rich chicken bone broth
  • Shredded chicken
  • Carrots, celery, onions, parsnips
  • Fresh herbs

Dinner: Grass-Fed Beef Roast with Vegetables

  • Slow-cooked beef roast
  • Roasted root vegetables (carrots, turnips, onions)
  • Side of fermented vegetables
  • Mixed green salad

Snack: Berries with coconut yogurt

Sunday

Breakfast: Liver and Onions with Sweet Potato

  • 4 oz beef liver, sautéed with caramelized onions
  • 1 cup sweet potato cubes
  • Side of cooked spinach
  • Liver is the most nutrient-dense food—try to include 2x weekly

Lunch: Leftover Beef Roast with vegetables

Dinner: Baked Cod with Brussels Sprouts

  • 6 oz cod with lemon and herbs
  • Roasted Brussels sprouts with bacon (pork belly)
  • Cauliflower mash
  • Arugula salad

Snack: Homemade fruit leather (pureed fruit, dehydrated)

Week 2: Expanding Variety

Monday

Breakfast: Ground Bison with Roasted Vegetables

  • 8 oz ground bison
  • Roasted zucchini, onions, mushrooms
  • Fresh herbs
  • Side of berries

Lunch: Leftover Cod with large salad

Dinner: Slow-Cooked Chicken with Root Vegetables

  • Whole chicken, slow-cooked
  • Carrots, parsnips, celery, onions
  • Make bone broth from bones after meal
  • Sauerkraut on side

Tuesday

Breakfast: Turkey Breakfast Sausage Scramble

  • Ground turkey formed into patties
  • Sautéed vegetables (broccoli, onions, kale)
  • Roasted sweet potato rounds

Lunch: Leftover Slow-Cooked Chicken + vegetables

Dinner: Pan-Seared Salmon with Fennel

  • 6 oz salmon
  • Roasted fennel bulb
  • Steamed artichoke
  • Mixed greens salad

Wednesday

Breakfast: Beef Heart with Vegetables

  • 6 oz beef heart, thinly sliced, sautéed
  • Roasted butternut squash
  • Sautéed chard
  • Organ meats 2-3x weekly provide exceptional nutrition

Lunch: Chicken Avocado Salad

  • Shredded chicken over mixed greens
  • Avocado slices
  • Cucumber, shredded carrots
  • Olive oil lemon dressing
  • Fermented beets

Dinner: Lamb Chops with Asparagus

  • 2-3 lamb chops
  • Grilled asparagus with garlic
  • Roasted cauliflower
  • Arugula salad with olive oil

Thursday

Breakfast: Pork Breakfast Hash

  • Ground pork
  • Diced sweet potato, apples, onions
  • Cinnamon, sage seasoning
  • Side of cooked spinach

Lunch: Leftover Lamb Chops with vegetables

Dinner: Turkey Lettuce Wraps

  • Ground turkey seasoned with ginger, garlic, coconut aminos
  • Butter lettuce leaves as wraps
  • Shredded cabbage slaw
  • Cucumber slices
  • Water chestnuts (if tolerated)

Friday

Breakfast: Sardine Breakfast Bowl

  • 1 can wild-caught sardines
  • Over bed of mixed greens
  • Sliced cucumber, avocado
  • Drizzle olive oil and lemon
  • Sweet potato on side

Lunch: Leftover Turkey Lettuce Wraps

Dinner: Grass-Fed Beef Burgers (no bun)

  • Grass-fed beef patties
  • Served over mixed greens
  • Caramelized onions
  • Avocado slices
  • Sweet potato fries (baked in avocado oil)
  • Fermented pickles (ensure AIP-compliant)

Saturday

Breakfast: AIP Smoothie Bowl

  • Banana, berries, coconut milk, collagen powder
  • Topped with coconut flakes, fresh berries
  • Side of breakfast sausage

Lunch: Chicken Vegetable Soup

  • Bone broth base
  • Shredded chicken
  • Carrots, celery, zucchini, onions
  • Fresh herbs

Dinner: Roasted Duck with Roasted Vegetables

  • Duck breast or leg quarters
  • Roasted root vegetables
  • Sautéed Brussels sprouts
  • Mixed green salad

Sunday

Breakfast: Chicken Liver Pâté with Vegetables

  • Homemade chicken liver pâté
  • Cucumber slices, carrot sticks for dipping
  • Side of roasted sweet potato
  • Berries

Lunch: Leftover Roasted Duck with vegetables

Dinner: Herb-Crusted White Fish

  • Halibut or other white fish
  • Herb crust (parsley, thyme, garlic)
  • Roasted broccoli and cauliflower
  • Mashed sweet potato

Weeks 3-4: Rhythm and Refinement

By weeks 3-4, you’ve established a rhythm with AIP cooking and eating. Continue rotating proteins, vegetables, and preparations from Weeks 1-2, making these adjustments:

Protein Rotation (Prevents Food Sensitivities):

  • Beef: 2-3x weekly
  • Chicken/Turkey: 3-4x weekly
  • Fish/Seafood: 3-4x weekly
  • Lamb/Pork/Bison: 1-2x weekly
  • Organ meats: 2-3x weekly (liver, heart, kidney)

Vegetable Variety (Aim for 20+ different types weekly):

  • Leafy greens: Daily
  • Cruciferous: 4-5x weekly
  • Root vegetables: Daily
  • Squashes: 3-4x weekly
  • Other vegetables: Fill in remaining meals

Fermented Foods (Build Gut Health):

  • Target: 1/4 cup daily with at least one meal
  • Rotate between sauerkraut, kimchi, fermented carrots, coconut yogurt

Bone Broth (Gut Healing Powerhouse):

  • Drink: 1-2 cups daily
  • Use as cooking liquid for grains substitutes (cauliflower rice)
  • Add to soups, stews

Essential AIP Recipes

AIP Basics: Staples to Master

AIP-Compliant Avocado Mayo (Traditional mayo contains eggs—this is your AIP substitute)

Ingredients:

  • 1 ripe avocado
  • 1/4 cup avocado oil
  • 2 tbsp lemon juice
  • 1/2 tsp sea salt
  • 1 clove garlic
  • 1-2 tbsp water (for consistency)

Instructions:

  1. Blend all ingredients in food processor until smooth
  2. Adjust consistency with water
  3. Store refrigerated up to 3 days
  4. Use for chicken/tuna salad, as condiment, in dressings

Homemade Bone Broth (Foundation of AIP—make weekly batches)

Ingredients:

  • 3-4 lbs bones (beef knuckle bones, chicken carcass, or mix)
  • 2 tbsp apple cider vinegar
  • 1 onion, quartered
  • 2 carrots, roughly chopped
  • 2 celery stalks
  • Filtered water to cover
  • Sea salt, peppercorns (optional—some avoid during strict AIP)

Instructions:

  1. Place bones in large pot or slow cooker
  2. Add apple cider vinegar, let sit 30 minutes (extracts minerals)
  3. Add vegetables and cover with water
  4. Bring to boil, then reduce to simmer
  5. Stovetop: Simmer 24-48 hours (beef), 12-24 hours (chicken)
  6. Slow cooker: Cook on low 24-48 hours
  7. Strain, discard solids
  8. Store refrigerated 5 days or freeze in portions

Why it’s essential: Contains collagen, gelatin, glucosamine, minerals that directly repair gut lining

AIP-Compliant Breakfast Sausage (Store-bought often contains nightshades and non-AIP ingredients)

Ingredients:

  • 1 lb ground pork (or turkey)
  • 1 tsp sea salt
  • 1/2 tsp garlic powder
  • 1/2 tsp onion powder
  • 1/4 tsp dried sage
  • 1/4 tsp dried thyme
  • 1/4 tsp turmeric (optional, for color)

Instructions:

  1. Mix all ingredients thoroughly
  2. Form into patties or links
  3. Cook in skillet over medium heat 4-5 minutes per side
  4. Or bake at 375°F for 20 minutes
  5. Make large batch, freeze for quick breakfasts

AIP Main Dishes

Slow-Cooker Pot Roast with Vegetables (Perfect make-ahead meal, yields leftovers)

Ingredients:

  • 3-4 lb grass-fed beef chuck roast
  • 2 tbsp avocado oil
  • 1 large onion, sliced
  • 4 carrots, cut in chunks
  • 3 parsnips, cut in chunks
  • 2 turnips, cut in chunks
  • 4 cloves garlic, smashed
  • 2 cups bone broth
  • 2 bay leaves
  • Fresh thyme, rosemary
  • Sea salt

Instructions:

  1. Season roast generously with sea salt
  2. Brown on all sides in avocado oil in large skillet
  3. Transfer to slow cooker
  4. Add vegetables around roast
  5. Pour in bone broth, add herbs
  6. Cook on low 8 hours
  7. Shred meat, serve with vegetables and cooking liquid

Lemon Garlic Chicken with Roasted Vegetables

Ingredients:

  • 4 chicken thighs (skin-on, bone-in) or breasts
  • 2 lemons (1 sliced, 1 juiced)
  • 6 garlic cloves, smashed
  • 2 tbsp avocado oil
  • Fresh rosemary, thyme
  • 2 cups Brussels sprouts, halved
  • 2 cups cauliflower florets
  • Sea salt

Instructions:

  1. Preheat oven to 425°F
  2. Season chicken with sea salt
  3. Arrange in roasting pan with lemon slices and garlic
  4. Toss vegetables in avocado oil, arrange around chicken
  5. Drizzle everything with lemon juice, add herbs
  6. Roast 35-40 minutes until chicken reaches 165°F
  7. Broil last 2-3 minutes for crispy skin

AIP Fish Cakes (Great way to include more seafood)

Ingredients:

  • 1 lb white fish (cod, halibut), cooked and flaked
  • 1/2 cup cooked, mashed sweet potato
  • 2 green onions, minced
  • 2 tbsp fresh parsley, minced
  • 1 tsp garlic powder
  • 1/2 tsp sea salt
  • Avocado oil for cooking

Instructions:

  1. Mix all ingredients in bowl
  2. Form into patties (about 8 cakes)
  3. Heat avocado oil in skillet over medium heat
  4. Cook 4-5 minutes per side until golden
  5. Serve with mixed greens and avocado mayo

AIP Sides and Vegetables

Cauliflower Rice (Grain substitute staple)

Ingredients:

  • 1 head cauliflower
  • 2 tbsp avocado oil or coconut oil
  • Sea salt
  • Optional: garlic powder, fresh herbs

Instructions:

  1. Cut cauliflower into florets
  2. Pulse in food processor until rice-sized pieces (or grate)
  3. Heat oil in large skillet
  4. Add cauliflower rice, sauté 5-7 minutes
  5. Season to taste
  6. Use anywhere you’d use regular rice

Roasted Root Vegetable Medley

Ingredients:

  • 2 cups carrots, cut in chunks
  • 2 cups sweet potatoes, cut in chunks
  • 2 cups beets, cut in chunks
  • 2 cups parsnips, cut in chunks
  • 3 tbsp avocado oil
  • Fresh rosemary, thyme
  • Sea salt

Instructions:

  1. Preheat oven to 425°F
  2. Toss vegetables in oil, herbs, salt
  3. Spread on two baking sheets (don’t overcrowd)
  4. Roast 30-35 minutes, stirring halfway
  5. Vegetables should be tender and caramelized

Sautéed Greens with Garlic (Daily vegetable staple)

Ingredients:

  • 1 bunch kale, chard, or collards (stems removed, chopped)
  • 3 cloves garlic, minced
  • 2 tbsp avocado oil or coconut oil
  • Squeeze of lemon
  • Sea salt

Instructions:

  1. Heat oil in large skillet
  2. Add garlic, sauté 30 seconds
  3. Add greens (will wilt significantly)
  4. Sauté 5-7 minutes until tender
  5. Finish with lemon juice and sea salt

AIP Breakfast Options

Sweet Potato Hash

Ingredients:

  • 2 large sweet potatoes, diced small
  • 1 lb ground meat (turkey, beef, or pork)
  • 1 onion, diced
  • 2 cups spinach or kale
  • 3 tbsp avocado oil
  • Garlic powder, turmeric, sea salt

Instructions:

  1. Heat 2 tbsp oil in large skillet
  2. Add sweet potatoes, cook 10-12 minutes until tender
  3. Remove sweet potatoes, set aside
  4. Add remaining oil, cook onions 3 minutes
  5. Add ground meat, season, cook through
  6. Add greens, cook until wilted
  7. Return sweet potatoes to pan, mix well
  8. Make double batch for easy breakfasts throughout week

AIP Smoothie

Ingredients:

  • 1 cup coconut milk (full-fat, canned)
  • 1 frozen banana
  • 1 cup frozen berries
  • 1 scoop collagen powder
  • 1 tbsp coconut oil
  • Handful spinach (optional—won’t taste it)
  • 1/2 tsp cinnamon

Instructions:

  1. Blend all ingredients until smooth
  2. Add ice if needed for thickness
  3. Quick breakfast when you’re rushed

Plantain Pancakes

Ingredients:

  • 2 ripe plantains (yellow with black spots)
  • 1/4 cup coconut flour
  • 1/4 cup coconut milk
  • 1/4 tsp cinnamon
  • 1/4 tsp sea salt
  • Coconut oil for cooking

Instructions:

  1. Mash plantains thoroughly
  2. Mix in remaining ingredients
  3. Heat coconut oil in skillet
  4. Pour 1/4 cup batter per pancake
  5. Cook 2-3 minutes per side
  6. Serve with berries and coconut cream

AIP Snacks and Treats

Homemade Sweet Potato Chips

Ingredients:

  • 2 large sweet potatoes
  • 2 tbsp avocado oil
  • Sea salt

Instructions:

  1. Slice sweet potatoes very thin (use mandoline)
  2. Toss in oil and salt
  3. Arrange in single layer on baking sheets
  4. Bake at 350°F for 20-25 minutes, flipping halfway
  5. Watch carefully last 5 minutes to prevent burning
  6. Cool completely for crispy texture

Apple Cinnamon “Cookies”

Ingredients:

  • 2 large apples, cored and sliced into 1/4-inch rounds
  • Coconut butter
  • Cinnamon
  • Coconut flakes

Instructions:

  1. Arrange apple slices on plate
  2. Spread thin layer of coconut butter on each
  3. Sprinkle with cinnamon and coconut flakes
  4. Simple, satisfying sweet treat

Bone Broth Gummies (Sounds weird, tastes great, amazing for gut healing)

Ingredients:

  • 2 cups bone broth
  • 3 tbsp gelatin powder
  • 1/4 cup fresh berries
  • 1 tbsp honey (optional)

Instructions:

  1. Heat 1 cup bone broth in saucepan
  2. Whisk in gelatin until dissolved
  3. Remove from heat, add remaining cold broth
  4. Add berries and honey, blend smooth
  5. Pour into silicone molds or glass dish
  6. Refrigerate 2-3 hours until set
  7. Cut into squares, store refrigerated

Complete AIP Shopping Lists

Weekly Shopping List Template

Proteins (Buy Fresh Weekly):

  • □ 1-2 lbs grass-fed ground beef
  • □ 1 lb grass-fed beef roast or steaks
  • □ 1-2 lbs chicken (thighs, breasts, or whole)
  • □ 1 lb ground turkey or pork
  • □ 1-2 lbs wild-caught fish (salmon, cod, or other)
  • □ 4-8 oz organ meats (liver, heart)
  • □ Bones for broth (if making this week)
  • □ Optional: lamb chops, duck, bison

Vegetables (Buy Fresh Weekly):

  • □ 3-4 sweet potatoes
  • □ 2 lbs mixed greens (kale, spinach, arugula, etc.)
  • □ 1 head cauliflower
  • □ 1 head broccoli
  • □ 1 bunch Brussels sprouts
  • □ 5-6 carrots
  • □ 2-3 zucchini or summer squash
  • □ 1 butternut or acorn squash
  • □ 2 onions
  • □ 1 head garlic
  • □ 1 bunch celery
  • □ 2 cucumbers
  • □ Mixed salad greens
  • □ 1-2 lbs other vegetables (asparagus, artichokes, beets, parsnips)

Fruits:

  • □ 2 containers berries (blueberries, strawberries)
  • □ 4-5 bananas
  • □ 3-4 apples or pears
  • □ 2-3 lemons
  • □ Avocados (3-5)

Fats and Oils:

  • □ Avocado oil (1 bottle)
  • □ Extra virgin olive oil (1 bottle)
  • □ Coconut oil (1 jar)
  • □ Coconut milk, full-fat canned (2-3 cans)

Fermented Foods:

  • □ Sauerkraut (1 jar, ensure no nightshades)
  • □ Kimchi (if tolerated, ensure AIP-compliant)
  • □ Fermented vegetables (carrots, beets)
  • □ Coconut yogurt, unsweetened

Pantry Staples (Stock Monthly):

  • □ Sea salt (large container)
  • □ Coconut flour
  • □ Cassava flour
  • □ Arrowroot powder
  • □ Apple cider vinegar
  • □ Coconut aminos
  • □ Bone broth (if not making homemade)
  • □ Coconut butter
  • □ Collagen powder

Fresh Herbs:

  • □ Basil, parsley, cilantro, thyme, rosemary (whatever you’ll use)

Dried Herbs/Spices:

  • □ Turmeric, ginger, cinnamon, garlic powder, onion powder

Monthly Budget Considerations

Estimated Monthly AIP Food Costs:

Budget-Conscious Approach: $400-600/month (single person)

  • Focus on affordable proteins (ground meats, chicken thighs, canned fish)
  • Buy vegetables in season
  • Make your own bone broth
  • Shop sales, buy in bulk

Moderate Approach: $600-900/month (single person)

  • Mix of grass-fed meats and conventional
  • Wild-caught fish 2-3x weekly
  • Organic vegetables when possible
  • Some convenience items (pre-made bone broth)

Optimal Approach: $900-1,500/month (single person)

  • 100% grass-fed/pasture-raised meats
  • Exclusively wild-caught seafood
  • All organic produce
  • Professional-grade supplements

Money-Saving Tips:

  1. Buy in bulk: Ground meats, chicken thighs freeze well
  2. Make bone broth: Instead of buying ($8-12/quart)
  3. Shop sales: Stock up when grass-fed meats on sale
  4. Use less expensive cuts: Tougher cuts (chuck roast, pork shoulder) perfect for slow cooking
  5. Organ meats: Incredibly nutrient-dense and cheap ($2-4/lb)
  6. Frozen vegetables: Just as nutritious, less expensive
  7. Seasonal produce: In-season vegetables significantly cheaper

Meal Prep Strategies for AIP Success

Sunday Meal Prep Session (2-3 Hours)

Proteins (1 Hour):

  1. Cook large batch of protein (whole chicken, pot roast, ground meat)
  2. Make breakfast sausage patties (form and freeze for quick breakfasts)
  3. Start bone broth in slow cooker (runs overnight)
  4. Optional: Bake salmon or other fish for first few days

Vegetables (45 Minutes):

  1. Roast multiple sheet pans of vegetables (sweet potatoes, Brussels sprouts, carrots)
  2. Chop raw vegetables for salads, snacking (carrots, cucumber, celery)
  3. Make cauliflower rice (doubles well, stores 5 days)
  4. Wash and prep greens for easy cooking throughout week

Staples and Convenience (30 Minutes):

  1. Make avocado mayo (lasts 3 days)
  2. Prepare salad dressing (large batch, lasts 1-2 weeks)
  3. Mix breakfast sausage seasonings for quick use
  4. Portion snacks (berries in small containers, veggie sticks)

Storage Strategy:

  • Glass containers (avoid plastic for autoimmune healing)
  • Label with dates
  • Store proteins separate from vegetables (proteins 3-4 days, vegetables 4-5 days)
  • Freeze extras in meal-sized portions

Time-Saving Weeknight Strategies

The “Bowl” Method:

  1. Choose protein (leftover or quick-cooking fish/ground meat)
  2. Add roasted or fresh vegetables
  3. Include fermented food (sauerkraut)
  4. Top with healthy fat (avocado, olive oil)
  5. Season with fresh herbs
  6. Total time: 10-15 minutes

Batch Cooking Focus:

  • Make double portions every dinner
  • Automatic next-day lunch
  • Reduces decision fatigue
  • Ensures compliance when tired

Slow Cooker/Instant Pot:

  • Set it in morning, dinner ready when home
  • Perfect for tougher cuts of meat
  • Minimal active cooking time
  • Makes bone broth effortlessly

Dining Out and Social Situations on AIP

Restaurant Strategies

Best Restaurant Choices:

  • Steakhouses (grilled meat, steamed vegetables)
  • Seafood restaurants (grilled fish, salads)
  • Mediterranean restaurants (often accommodate modifications)
  • Farm-to-table restaurants (understand special diets)

What to Request:

  • “Protein grilled with only olive oil, sea salt, lemon”
  • “Steamed vegetables, no butter or seasonings”
  • “Mixed greens with olive oil and lemon” (bring own avocado if needed)
  • “Sweet potato, plain baked”

What to Avoid:

  • Anything breaded, fried, or with sauce
  • Seasoning blends (often contain nightshades)
  • Cross-contamination from grills
  • Butter, cheese, sour cream

Advanced Tip: Call restaurant ahead, speak to manager or chef about dietary needs. Most quality restaurants willing to accommodate when given advance notice.

Social Gatherings

Strategies for Success:

  1. Eat before you go: Never arrive hungry
  2. Bring your own dish: Ensures something you can eat
  3. Be prepared to explain: Simple: “I’m doing elimination diet for health reasons”
  4. Don’t make it a big deal: Others take cue from your attitude
  5. Focus on connection: Not food

What to Bring to Gatherings:

  • Compliant vegetable platter with avocado-based dip
  • Grilled meat skewers
  • Roasted root vegetables
  • AIP-compliant salad
  • Fruit platter

Handling Food Pushers:

  • “I’m following doctor’s orders”
  • “My health depends on it”
  • “I’ll have some later” (then don’t)
  • Change subject quickly

Travel on AIP

Airplane Travel:

  • Pack compliant snacks (fruit, plantain chips, jerky)
  • Ask for fruit plates, salads without dressing
  • Bring avocados, cut at destination
  • Epic bars (some are AIP-compliant)

Hotel Stays:

  • Request room with refrigerator
  • Bring small cooler with essentials
  • Stock room with fresh fruit, vegetables, compliant snacks
  • Use local grocery stores
  • Find AIP-friendly restaurants in advance

International Travel:

  • Research local options beforehand
  • Pack shelf-stable compliant foods
  • Learn key phrases in local language
  • Prioritize protein and vegetables
  • Accept imperfection (stress worse than occasional non-compliance)

The Reintroduction Protocol: Finding Your Personal Triggers

When to Begin Reintroduction

Minimum Requirements Before Reintroduction:

✅ 90+ days on strict AIP (60 days absolute minimum)
✅ Significant symptom improvement (60-80% reduction)
✅ Stable health for 30+ consecutive days
✅ No active flares or setbacks
✅ Willingness to pause/restart if reactions occur
✅ Food and symptom diary prepared for tracking

Important: If symptoms not substantially improved after 90 days, focus on identifying other root causes (infections, stress, toxin exposure) before reintroduction.

Reintroduction Order (Least to Most Reactive)

Phase 1: Typically Well-Tolerated

  1. Egg yolks (cooked, not raw)
    • Test: 1 cooked egg yolk with meal
    • Why first: Less reactive than whites
  2. Seed-based spices (cumin, coriander, fennel, etc.)
    • Test: 1 tsp in cooking
    • Note: Still avoid nightshade-based spices (paprika, cayenne)
  3. Grass-fed butter or ghee
    • Test: 1 tbsp with meal
    • Why: Most milk proteins removed
  4. Legumes with edible pods (green beans, snow peas)
    • Test: 1/2 cup cooked
    • Why: Lower lectin content than other legumes

Phase 2: Moderate Reintroduction

  1. Nuts (start with least allergenic: macadamia, then pecan, walnut, almond)
    • Test: Small handful (about 10 nuts)
    • Wait 7 days between each nut type
  2. Seeds (sunflower, pumpkin, sesame, chia, flax)
    • Test: 1-2 tbsp
    • Wait 5-7 days between each seed type
  3. Coffee
    • Test: 1 cup black coffee (no additives)
    • Note: Some never tolerate due to immune activation
  4. Alcohol (dry wine, clear spirits in small amounts)
    • Test: 1 serving
    • Consider: May not be worth reintroducing

Phase 3: Higher Risk Foods

  1. Nightshade vegetables (start with paprika, then bell peppers, then tomatoes, potatoes last)
    • Test: Very small amount first (1/4 tsp paprika in cooking)
    • These are highly individual—some tolerate, some never will
  2. Egg whites
    • Test: 1 whole egg (yolk + white)
    • Higher immune reactivity than yolks alone
  3. Other legumes (lentils, chickpeas, black beans)
    • Test: 1/4 cup cooked, well-prepared (soaked overnight)
    • May need to start with legume-based flours first

Phase 4: Most Likely Problematic (Consider Permanent Elimination)

  1. Dairy (fermented first—yogurt, kefir, then hard cheeses, soft cheeses, milk last)
    • Test: Small amount (2 tbsp yogurt)
    • Many autoimmune patients never tolerate dairy
  2. Grains (gluten-free first—white rice, then oats, then other grains)
    • Test: 1/4 cup cooked white rice
    • Save gluten-containing grains for very last (or never reintroduce)
  3. Gluten-containing grains (wheat, rye, barley)
    • Strong recommendation: Consider permanent elimination
    • High molecular mimicry with thyroid tissue
    • Cross-reactivity common in autoimmune conditions

How to Properly Reintroduce Foods

The 7-Day Reintroduction Protocol:

Day 1: First Exposure

  • Eat tested food 3 times throughout day
    • Small amount morning (1-2 bites)
    • Small amount midday (1-2 bites)
    • Normal portion evening
  • Continue strict AIP for all other meals

Days 2-7: Observation Period

  • Remove tested food completely
  • Return to strict AIP
  • Monitor symptoms carefully

Symptoms to Track:

Immediate (within 3 hours):

  • Digestive: Bloating, gas, stomach pain, diarrhea, heartburn
  • Skin: Flushing, itching, hives, eczema flare
  • Respiratory: Runny nose, congestion, wheezing, throat tightness
  • Neurological: Headache, brain fog, dizziness, fatigue
  • Mood: Anxiety, irritability, depression

Delayed (24-72 hours):

  • Joint pain, stiffness, swelling
  • Muscle aches
  • Worsening autoimmune symptoms
  • Energy crashes
  • Sleep disruption
  • Skin breakouts
  • Mood changes

Days 8+: Decision Point

No Symptoms → Food Passed ✅

  • Add food back into rotation (don’t eat daily)
  • Move to next food on reintroduction list
  • Wait 5-7 days before testing new food

Symptoms Occurred → Food Failed ❌

  • Remove food from diet completely
  • Allow symptoms to fully resolve (7-14 days)
  • Consider retesting in 6-12 months
  • Some foods may be permanent eliminations

Unclear Results → Retest

  • Wait 7 more days
  • Repeat testing protocol
  • If unclear again, consider food intolerance test

Long-Term AIP: Finding Your Personal Diet

The Goal of Reintroduction:

The AIP elimination phase is not meant to be followed forever. The goal is identifying your personal trigger foods so you can eat the most diverse, nutrient-dense diet possible while avoiding only foods that genuinely cause immune activation.

Common Long-Term Patterns:

Pattern 1: Modified AIP (Most Common)

  • Permanently avoid: Gluten, dairy, eggs, nightshades
  • Successfully reintroduce: Nuts, seeds, some legumes, coffee
  • Maintains: 70-80% symptom improvement

Pattern 2: Expanded AIP

  • Permanently avoid: Gluten, dairy, nightshades
  • Successfully reintroduce: Eggs, nuts, seeds, most legumes
  • Maintains: 80-90% symptom improvement

Pattern 3: Strict AIP Long-Term (Less Common)

  • Very sensitive to reintroductions
  • Requires continued strict AIP for symptom control
  • Focus: Maximizing diversity within AIP foods
  • Maintains: Best symptom control

Pattern 4: Full Reintroduction (Rare)

  • Successfully reintroduces most eliminated foods
  • May still avoid gluten long-term
  • Maintains: Full remission

Supporting Your AIP Journey: Beyond Diet

Comprehensive Autoimmune Management

While diet is foundational, successful autoimmune management requires addressing multiple factors:

Gut Health Support:

  • GlutaShield: Supports intestinal barrier repair
    • L-glutamine (5-10g daily)
    • DGL, aloe vera, zinc carnosine
  • Digestive enzymes: Support proper breakdown of foods
  • HCl supplementation: If low stomach acid present
  • Probiotics (after initial 30 days): Supports microbiome diversity

Inflammation Reduction:

  • Omega-3 fatty acids: 2-4g combined EPA/DHA daily
  • Curcumin: 1,000mg 2x daily (with black pepper for absorption)
  • Vitamin D3: Optimize to 60-80 ng/mL
  • Antioxidants: From colorful vegetables, berries

Stress Management (Critical):

Research shows chronic stress directly impairs gut barrier function and immune regulation:

  • Daily meditation or breathwork (10-20 minutes)
  • Regular exercise (gentle, not over-training)
  • Adequate sleep (7-9 hours nightly)
  • Nature exposure (especially important in South Florida)
  • Professional support when needed

Environmental Factors:

South Florida residents face unique challenges:

  • Mold exposure: Address dampness, use HEPA filters, dehumidifiers
  • Water quality: Filter drinking/cooking water
  • Heat stress: Stay hydrated, manage sun exposure
  • Humidity: Affects gut health, requires vigilance

Working With a Functional Medicine Practitioner

While AIP can be implemented independently, working with a functional medicine physician provides significant advantages:

Comprehensive Testing:

  • Advanced antibody panels
  • Comprehensive stool analysis
  • Food sensitivity testing
  • Nutrient deficiency assessment
  • Environmental toxin screening

Personalized Protocol Development:

  • Individual timing and modifications
  • Supplement recommendations
  • Root cause identification
  • Medication integration when needed

Ongoing Support:

  • Monitoring through reintroduction
  • Adjusting protocol based on response
  • Troubleshooting challenges
  • Long-term optimization

As a board-certified physician with 25+ years of medical experience, including oncology background before transitioning to functional medicine, I bring unique expertise to autoimmune management. My approach combines conventional medical knowledge with evidence-based functional medicine protocols, ensuring safe, effective treatment that addresses root causes while respecting the complexity of autoimmune conditions.

Frequently Asked Questions

Q: How long do I need to follow AIP before I can reintroduce foods?

Minimum 30 days, optimal 60-90 days, with some individuals requiring 6+ months before reintroduction. The key indicator is significant symptom improvement (60-80% reduction) and stable health for 30+ consecutive days. Rushing reintroduction undermines the entire process and makes it harder to identify true triggers.

Q: Can I eat out on AIP?

Yes, but it requires planning and clear communication. Steakhouses, seafood restaurants, and farm-to-table establishments typically accommodate best. Request simple grilled proteins with olive oil and sea salt, steamed vegetables without seasonings, and salads with olive oil and lemon. Bring your own compliant dressing or avocado if needed. Call ahead for complex dietary needs.

Q: Is AIP safe long-term?

AIP elimination phase is not intended as a permanent diet—it’s a therapeutic elimination diet to identify triggers. Once reintroduction is complete, most people follow a modified version that eliminates only their personal trigger foods while including as much variety as possible. Strict AIP provides all essential nutrients when properly implemented with organ meats, seafood, and diverse vegetables.

Q: What if I’m not improving on AIP?

If you’ve followed strict AIP for 90+ days without significant improvement, several factors may be at play: hidden non-compliance (reading labels carefully?), underlying infections (SIBO, parasites, H. pylori), chronic stress undermining healing, environmental toxins (mold exposure), or medication side effects. Work with a functional medicine practitioner to investigate root causes beyond diet.

Q: Can I do AIP if I’m vegetarian or vegan?

AIP is extremely difficult as vegetarian/vegan due to elimination of grains, legumes, soy, nuts, and seeds—typical vegetarian protein sources. Some people attempt “veggie-forward AIP” focusing on fish and limited poultry, but most find they need animal proteins for adequate nutrition and symptom improvement. The decision requires weighing ethical beliefs against health needs.

Q: How do I handle AIP with kids?

Children can follow modified AIP under practitioner guidance, but shouldn’t follow long-term restrictive diets without medical supervision. Focus on adding AIP-compliant foods rather than emphasizing restrictions. Make it fun (colorful vegetables, special “superhero” meals). Ensure adequate calories for growth. Most children are more resilient than adults and may tolerate reintroductions better.

Q: Will AIP cure my autoimmune disease?

AIP doesn’t “cure” autoimmune conditions, but research shows it can induce remission, significantly reduce symptoms, and sometimes lower antibody levels. Results vary by condition, individual factors, and how comprehensively the protocol is followed. Some people achieve complete symptom resolution, others significant improvement, some modest improvement. It’s a powerful tool, not a guarantee.

Q: Can I drink alcohol on AIP?

Alcohol is eliminated during AIP because it increases intestinal permeability, impairs gut healing, and triggers inflammation. During reintroduction phase (months 4-6+), small amounts of clear spirits or dry wine can be tested. Many people find alcohol worsens symptoms even after reintroduction and choose to minimize or eliminate long-term.

Q: What’s the difference between AIP and Paleo?

AIP is a more restrictive therapeutic version of Paleo designed specifically for autoimmune conditions. While Paleo eliminates grains, legumes, dairy, and processed foods, AIP additionally removes eggs, nightshades, nuts, seeds, and certain spices that can trigger immune reactions. AIP also emphasizes gut-healing foods (bone broth, fermented foods, organ meats) and includes systematic reintroduction protocol.

Q: How much does it cost to follow AIP?

Budget varies widely: $400-600/month (budget approach with ground meats, seasonal vegetables), $600-900/month (moderate with grass-fed meats and organic produce), $900-1,500+/month (optimal with all grass-fed, wild-caught, organic). Money-saving strategies: buy in bulk, choose less expensive cuts, make your own bone broth, shop sales, use frozen vegetables, include affordable organ meats.

Your AIP Success Roadmap

Week 1: Preparation and Planning

  • ✅ Clear kitchen of non-compliant foods
  • ✅ Stock pantry and fridge with AIP staples
  • ✅ Plan first week of meals
  • ✅ Prep some foods in advance (bone broth, breakfast sausage)
  • ✅ Start food and symptom diary
  • ✅ Set up support system (family, friends, online community)

Weeks 2-4: Initial Adaptation

  • ✅ Follow meal plans, track symptoms daily
  • ✅ Experiment with new recipes
  • ✅ Establish meal prep routine
  • ✅ Navigate first social situations
  • ✅ Notice initial improvements

Weeks 5-12: Healing and Stabilization

  • ✅ Continue strict compliance
  • ✅ Expand recipe repertoire
  • ✅ Maximize vegetable diversity
  • ✅ Include organ meats 2-3x weekly
  • ✅ Track symptom improvements
  • ✅ Consider working with practitioner for labs, supplements

Months 4-6: Reintroduction Phase

  • ✅ Begin systematic food reintroductions
  • ✅ Track responses carefully
  • ✅ Identify personal trigger foods
  • ✅ Develop sustainable long-term eating pattern
  • ✅ Celebrate your health improvements!

Long-Term: Maintenance and Optimization

  • ✅ Follow personalized modified AIP
  • ✅ Continue nutrient-dense eating
  • ✅ Maintain gut health support
  • ✅ Manage stress effectively
  • ✅ Address environmental factors
  • ✅ Monitor symptoms, adjust as needed

Conclusion: Your Journey to Autoimmune Remission Begins Today

Autoimmune protocol meal planning represents one of the most powerful dietary interventions available for autoimmune disease management. While the elimination phase feels restrictive, the potential for significant symptom improvement—or even remission—makes the temporary sacrifice worthwhile for most patients.

The research is clear: 70-80% of people following AIP experience meaningful symptom reduction within 6-10 weeks. Many see reduction in autoimmune antibodies, decreased medication needs, improved energy, better sleep, reduced pain, and enhanced quality of life. These outcomes reflect AIP’s ability to address the root cause of autoimmune dysfunction—intestinal permeability and immune system dysregulation—rather than simply suppressing symptoms with medication.

Success requires:

✅ Commitment: Minimum 90 days strict compliance
✅ Planning: Meal preparation and advance thinking
✅ Patience: Healing takes time, usually 3-6 months
✅ Persistence: Social challenges and initial adjustment period
✅ Personalization: Finding your individual trigger foods through reintroduction
✅ Comprehensive approach: Combining diet with stress management, sleep, supplements

This guide provides everything you need to successfully implement AIP: complete meal plans, detailed recipes, shopping lists, restaurant strategies, and systematic reintroduction protocols. Whether you’re just beginning your autoimmune journey or have been struggling for years with conventional treatments, AIP offers evidence-based hope for reclaiming your health.

Remember that AIP is a therapeutic elimination diet, not a permanent eating pattern. The goal is identifying your personal trigger foods so you can enjoy the most diverse, nutrient-dense diet possible while maintaining symptom remission. Most people following AIP long-term eat a modified version that eliminates only their specific triggers while including many previously eliminated foods.

Ready to begin your autoimmune protocol journey?

📞 Contact our Jupiter, Florida office to schedule a comprehensive autoimmune assessment with Dr. Scott Watkins, or explore our professional-grade supplement protocols to support your AIP implementation.

For additional autoimmune and gut health resources, visit our Learning Center and discover how functional medicine approaches can help you achieve lasting remission from autoimmune symptoms.

Medical Disclaimer: This article is for educational purposes only and does not constitute medical advice. The Autoimmune Protocol should be implemented under healthcare provider guidance, especially if you take immunosuppressive medications or have complex medical conditions. Never discontinue prescribed medications without physician approval. Consult your healthcare provider before beginning AIP, particularly if you have eating disorder history, are pregnant/nursing, or have multiple medical conditions. Individual results vary based on autoimmune condition type, severity, compliance, and overall health status.

About Dr. Scott Watkins, M.D.

Dr. Watkins is a board-certified radiation oncologist who transitioned to functional medicine after recognizing the profound limitations of conventional approaches for autoimmune and chronic conditions. With over 25 years of medical experience and advanced training from the Institute for Functional Medicine, he specializes in evidence-based dietary interventions, gut health restoration, and comprehensive autoimmune management. Practicing in Jupiter, Florida, Dr. Watkins brings unique expertise combining conventional medical knowledge with functional medicine protocols, ensuring safe, effective treatment that addresses root causes rather than merely suppressing symptoms. His approach to autoimmune conditions emphasizes the critical role of gut health, environmental factors specific to South Florida, and personalized treatment strategies based on individual triggers and needs. Learn more about Dr. Watkins’ integrative approach to autoimmune disease →